The sponge microbiome project

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August undefined, 2024

WebMar 10, 2024 · Methanotrophy by the sponge-hosted microbiome has been mainly reported in the ecological context of deep-sea hydrocarbon seep niches where methane is either … http://gigadb.org/dataset/view/id/100332/File_page/2

Erratum to: The sponge microbiome project - Oxford Academic

WebAug 22, 2024 · Sponge diversity has been reported to decrease from well-preserved to polluted environments, but whether diversity and intra-species variation of their … WebFeb 1, 2024 · Overview of the dataset. The non-targeted LC-MS/MS metabolomic dataset contained a total of 10,118 MFs from the whole sponge tissue (ST) and microbial cell (MC) samples across the six sponge species, and 3422 of them were detected in at least two samples and were used for data normalization and downstream analysis (Table 1).The ST … find a journal springer

GigaDB Dataset - DOI 10.5524/100332 - Supporting data for "The sponge …

WebHere, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal, and environmental scales. Samples from marine sponges (n = 3569 specimens), seawater (n = 370), marine sediments (n = 65) and other environments (n = 29) were collected from different locations across the globe. WebDec 26, 2024 · Members of the widespread bacterial phylum Chloroflexi can dominate high-microbial-abundance (HMA) sponge microbiomes. In the Sponge Microbiome Project, … WebOct 1, 2024 · Here, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal, and environmental … find a journalist uk

Biodiversity, environmental drivers, and sustainability of the global ...

The sponge microbiome project — Research@WUR

WebFeb 8, 2024 · To investigate the global distribution of a sponge symbiont, the V4 region of the 16S rRNA gene extracted from the MAG was searched by BLASTN (e-value cutoff: 1e-05) against the datasets of 16S rRNA gene sequences in the Sponge Microbiome Project (SMP) (Moitinho-Silva et al., 2024b) and the Deep-sea Sponge Microbiome Project database (D … WebApr 9, 2024 · Biodiversity, environmental drivers, and sustainability of the global deep-sea sponge microbiome. Kathrin Busch. Beate M. Slaby. Ute Hentschel. Nature … gtav cars to steal gta v casino penthouse issue

"WebApr 11, 2024 · Increased microbial densities in the seawater may also favor the emergence of coral pathogens and decrease resistance to coral bleaching due to dysbiosis in the coral microbiome and its surroundings [49,50,51,52]. Despite these connections between microbes and higher trophic levels, very few studies combine both micro and macro data … " - The sponge microbiome project

The sponge microbiome project

GigaDB Dataset - DOI 10.5524/100332 - Supporting data for "The …

WebOct 19, 2024 · Members of the proposed phylum ‘Candidatus Poribacteria’ are among the most abundant microorganisms in the highly diverse microbiome of the sponge mesohyl. Genomic and phylogenetic characteristics of this proposed phylum are barely known. In this study, we analyzed metagenome-assembled genomes (MAGs) obtained from the coral … WebAug 16, 2024 · This dataset represents a comprehensive resource of sponge-associated microbial communities based on 16S rRNA gene sequences that can be used to address overarching hypotheses regarding host-associated prokaryotes, including host specificity, convergent evolution, environmental drivers of microbiome structure, and the sponge- …

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http://gigadb.org/dataset/100332 WebApr 27, 2024 · Global assessments of sponge microbiome composition and diversity as part of the Global Sponge Microbiome Project also support these regional trends (Thomas et al. 2016; Moitinho-Silva et al. 2024a; Pita et al. 2024). This, along with strong phylogenetic relationships in microbiome diversity, ...

WebJan 8, 2024 · Moreover, Thaumarchaeota phylum is the single widely reported archaea taxon in the Sponge Microbiome Project that includes sponges from all over the world (Moitinho-Silva et al., 2024). Usually, few archaeal OTUs dominated the archaeal community of sponges from deep-sea environments ... WebJul 13, 2024 · A total of 10 functional genes, nifH, amoA, narG, napA, nirK, norB, nosZ, ureC, nrfA, and gltB, were detected in the microbiome of the sponge S. vesparium by gene-targeted analysis, revealing an almost complete nitrogen-cycling network in this sponge. Particularly, bacterial urea utilization and the whole denitrification pathway were highlighted.

WebThe sponge microbiome project Lucas Moitinho-Silva 1 , Shaun Nielsen 1 , Amnon Amir 2 , Antonio Gonzalez , Gail L. Ackermann 2 , Carlo Cerrano 3 , Carmen Astudillo-Garcia 4 , … WebJul 3, 2024 · The sponge microbiome project. Gigascience. 2024;6:1–7. Article CAS PubMed Google Scholar Lurgi M, Thomas T, Wemheuer B, Webster NS, Montoya JM. Modularity and predicted functions of the global ...

WebMay 8, 2024 · The Sponge Microbiome Project was queried to explore the HMA-LMA dichotomy in the largest currently available dataset on sponge microbiomes. Our results strongly support previous findings that showed a higher diversity and different microbial community structures in HMA compared to LMA sponges. A number of clades (phyla, …

WebApr 11, 2024 · This paper presents the results of observations of the Baikal sponge fauna within the transects established throughout Baikal in 2015. The types of damage of Baikal sponges have been characterized based on visual descriptions. ... To study the microbiome characteristics of healthy and damaged sponges, the diversity of bacterial groups was ... gta v catfish viewWebMar 10, 2024 · Methanotrophy by the sponge-hosted microbiome has been mainly reported in the ecological context of deep-sea hydrocarbon seep niches where methane is either produced geothermically or via anaerobic methanogenic archaea inhabiting the sulfate-depleted sediments. However, methane-oxidizing bacteria from the candidate phylum … gta v cars real life counterpartsWebSpongeEMP Web + REST-API server for the SpongeEMP project. SpongeEMP is a comprehensive datatset of sea sponge microbiome samples, which is a part of the Earth … gta v casino single playerWebJun 28, 2024 · SM-BGC and metabolomics networks suggest the presence of novel polyketides and peptides, including cyclic depsipeptide-related compounds. Moreover, exploration of the 'Sponge Microbiome Project' dataset revealed that Aquimarina spp. possess low-abundance distributions worldwide across multiple marine biotopes. Our … gta v cash locationsWebJan 11, 2024 · the Sponge Microbiome Project (SMP) (Thomas et al., 2016; Moitinho-Silva et al., 2024b) part of the Earth Microbiome. Project (EMP 3). The project contains 16S rRNA gene amplicon. gta v cayo perico bearer bondsWebMay 8, 2024 · The Sponge Microbiome Project was queried to explore the HMA-LMA dichotomy in the largest currently available dataset on sponge microbiomes. Our results … find a journalWebDec 26, 2024 · Members of the widespread bacterial phylum Chloroflexi can dominate high-microbial-abundance (HMA) sponge microbiomes. In the Sponge Microbiome Project, Chloroflexi sequences amounted to 20 to 30% of the total microbiome of certain HMA sponge genera with the classes/clades SAR202, Caldilineae, and Anaerolineae being the … find a job working remote